Comments on: Updating my Newick parser http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/?utm_source=rss&utm_medium=rss&utm_campaign=updating-my-newick-parser Computer science, bioinformatics, genetics, and everything in between Tue, 31 Aug 2010 00:06:07 +0200 hourly 1 http://wordpress.org/?v=3.0 By: Michael Kuhn http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-4857 Michael Kuhn Fri, 15 Jan 2010 08:45:30 +0000 http://www.mailund.dk/?p=423#comment-4857 Hi Thomas, I added support for internal node labels to your parser, but probably broke support for bootstraps (which I don't need at the moment). See: http://blog.mckuhn.de/2010/01/newick-parser-for-python-supporting.html http://bitbucket.org/mkuhn/newick/ best wishes, Michael Hi Thomas,

I added support for internal node labels to your parser, but probably broke support for bootstraps (which I don’t need at the moment). See:

http://blog.mckuhn.de/2010/01/newick-parser-for-python-supporting.html
http://bitbucket.org/mkuhn/newick/

best wishes, Michael

]]> By: Thomas Mailund http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-3315 Thomas Mailund Wed, 01 Jul 2009 18:47:05 +0000 http://www.mailund.dk/?p=423#comment-3315 Alan: I'd love to, but let me know what your problem is first. I thought I explained that on the web page, but if there are any problems I need to update the description there, so your help in letting me know where I am unclear would be much appreciated! Alan: I’d love to, but let me know what your problem is first. I thought I explained that on the web page, but if there are any problems I need to update the description there, so your help in letting me know where I am unclear would be much appreciated!

]]> By: Alan Rogers http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-3314 Alan Rogers Wed, 01 Jul 2009 18:40:56 +0000 http://www.mailund.dk/?p=423#comment-3314 I just had a look at your newick parser in python. Looks like it might be just what I need. Can you tell me how to use it? Thanks, Alan I just had a look at your newick parser in python. Looks like it might be just what
I need. Can you tell me how to use it?

Thanks, Alan

]]> By: Mailund on the Internet » Blog Archive » Newick C++ parser in Boost.Spirit http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-1989 Mailund on the Internet » Blog Archive » Newick C++ parser in Boost.Spirit Fri, 03 Oct 2008 07:37:37 +0000 http://www.mailund.dk/?p=423#comment-1989 [...] the Newick parser for C++ I mentioned in a previous post.  It is written in Boost.Spirit, so it is a recursive decend parser.  This might give you [...] [...] the Newick parser for C++ I mentioned in a previous post.  It is written in Boost.Spirit, so it is a recursive decend parser.  This might give you [...]

]]> By: Thomas Mailund http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-1988 Thomas Mailund Fri, 03 Oct 2008 06:13:31 +0000 http://www.mailund.dk/?p=423#comment-1988 Let me just clean up the code and I'll put it on the web. I just need to remove some bits and pieces from other projects, that do not really belong with the parser. Let me just clean up the code and I’ll put it on the web. I just need to remove some bits and pieces from other projects, that do not really belong with the parser.

]]> By: Reed A. Cartwright http://www.mailund.dk/index.php/2008/09/30/updating-my-newick-parser/comment-page-1/#comment-1987 Reed A. Cartwright Fri, 03 Oct 2008 05:58:56 +0000 http://www.mailund.dk/?p=423#comment-1987 Ooh, a Spirit-based newick parser. I could use that for when I redo Dawg. Ooh, a Spirit-based newick parser. I could use that for when I redo Dawg.

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